RNA-seq workshop R and Rstudio installation and DESeq2 script execution instructions

We will use Rstudio on the biocompace (IDIS) server

1. Log in to biocompace (IDIS) server, for Mac and linux – Terminal, for Windows - Putty

ssh -v -L 8787:localhost:8787 bjeffrey@137.63.194.9

Use your username!


2.  Pull code from GitHub

git clone https://github.com/niaid/ACE_Uganda_2021_RNAseq


3.  Navigate to ACE_Uganda_2021_RNAseq directory

cd ACE_Uganda_2021_RNAseq


4.  Paste localhost:8787 in your web browser


5.  In Rstudio console paste in:

setwd("ACE_Uganda_2021_RNAseq/")



Rstudio shortcuts:
execute line by line by pressing command-enter. (key to left of spacebar on Mac)

