10-12 September 2019
Workshop Schedule
INSTRUCTORS
Computational Biology Specialists from the National Institute of Allergy and Infectious Diseases (NIAID) will be teaching courses on bioinformatics topics and biocomputing tools.
Mariam Quiñones, Ph.D.
Phil Cruz, Ph.D.*
Jingwen Gu, M.S.*
Brendan Jeffrey, Ph.D.*
Victor Starr Kramer*
Meghan McCarthy, Ph.D.*
Amit Roy, Ph.D.*
Poorani Subramanian, Ph.D.*
Claire Wang, M.S.*
* Instructors provide bioinformatics support at the NIAID as employees of Medical Science and Computing, Inc.
SCHEDULE
WORKSHOP 1
Room A322
Tuesday, September 10, 2019
- 9:00 - 10:00
- How Can BCBB’s Computational Resources Help Advance Your Research?
Presenter: Darrell Hurt, PhD
Chief, Bioinformatics & Computational Biosciences Branch, OCICB
- 10:00 - 12:00
- Genomics 101: Geneious
- 12:00 - 1:00
- Lunch Break
- 1:00 - 3:00
- Tool Highlight: Introduction to Prism 8 for Visualization and Statistics
- 3:00 - 5:00
- R 101: Introduction to R, R Studio, and Visualization
Wednesday, September 11, 2019
- 9:00 - 11:00
- Genomics 102: Introduction to NGS, Data Processing, & Mapping Using NIAID’s Locus HPC
- 11:00 - 12:00
- R 102: Statistical Testing - Part 1
- 12:00 - 1:00
- Lunch Break
- 1:00 - 3:00
- R 102: Statistical Testing - Part 2
- 3:00 - 5:00
- Introduction to Python - Part 2
Thursday, September 12, 2019
- 9:00 - 12:00
- RNASeq Analysis using DESeq2 and R
- 12:00 - 1:00
- Lunch Break
- 1:00 - 4:00
- R 103: Categorical Data Analysis
WORKSHOP 2
Room A320
Tuesday, September 10, 2019
- 11:00 - 12:00
- Basics of Unix - Part 1
- 12:00 - 1:00
- Lunch Break
- 1:00 - 2:30
- Basics of Unix - Part 2
- 2:30 - 4:30
- Introduction to Structural Biology
Wednesday, September 11, 2019
- 11:00 - 12:00
- Introduction to Python - Part 1
- 12:00 - 1:00
- Lunch Break
- 1:00 - 4:00
- Chimera X for Molecular Modeling, CryoEM, and Virtual Reality
Guest Presenter: Tom Goddard, UCSF
Thursday, September 12, 2019
- 9:00 - 10:00
- Tool Highlight: Microbiome Data Analysis Using Nephele, NIAID’s
Web Platform
- 11:00 - 12:00
- Using METAGENOTE for Annotation and Submission to NCBI’s Sequence Read Archive
- 12:00 - 1:00
- Lunch Break
- 1:00 - 2:00
- Pathways Analysis with IPA
VIRTUAL REALITY DEMOS
Seminar Room
Virtual Reality demonstrations will be offered each day from 9:00 am - 5:00 pm, with a lunch break from 12:00 - 1:00 pm, with the exception of Tuesday, during the Distinguished Speaker Seminar from 10:30 am - 12:00 pm.
Sign up for a slot by visiting http://bit.ly/RMLbioworkshop
OFFICE HOURS
Room A309 & A310
Instructors will be available for one-on-one demonstrations and consultations from 9:00 am - 5:00 pm, with a lunchbreak from 12:00 - 1:00 pm.
Sign up for a slot by visiting http://bit.ly/RMLbioworkshop
SURVEY
Please complete the following survey. Your feedback and suggestions will be appreciated.
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