Command Line Interface¶
The Pytools packages contain a command line executables for various tasks. They can be invoke directly as an executable:
zarr_rechunk --help
Or the preferred way using the python executable to execute the module entry point:
python -m zarr_rechunk --help
With either method of invoking the command line interface, the following sections describes the sub-commands available and the command line options available.
zarr_rechunk¶
zarr_rechunk [OPTIONS] INPUT_ZARR
Options
- --log-level <log_level>¶
- Options:
DEBUG | INFO | WARNING | ERROR
- --chunk-size <chunk_size>¶
The size of zarr chunks stored in spatial dimensions.
- Default:
64
- --recompress¶
Use the preferred compressor when recompressing.
- Default:
False
- --in-memory¶
Use in-memory zarr store when recompressing.
- Default:
False
- --version¶
Show the version and exit.
Arguments
- INPUT_ZARR¶
Required argument
zarr_info¶
zarr_info [OPTIONS] INPUT_ZARR
Options
- --show¶
Use SimpleITK Show function to display images at 1024x1024 resolution.
- Default:
False
- --log-level <log_level>¶
- Options:
DEBUG | INFO | WARNING | ERROR
- --version¶
Show the version and exit.
Arguments
- INPUT_ZARR¶
Required argument