Learning Resources
Learning Resources
GitHub repositories with training materials, example code, and bioinformatics resources from NIAID.
Content for a training processing raw 16S reads through the DADA2 package in R
The goal of this repository is to provide a series of course materials that is used for online seminars to introduce R programming.
Course materials as part of the ACE bioinformatics course in Population Genetics & Genomics
Training materials for a hands-on single-cell RNA sequencing (scRNA-seq) tutorial, covering core analysis workflows with Seurat and automated cell type annotation using SingleR.
RNA Seq Course materials as part of the ACE_Uganda bioinformatics course, Spring 2021
ASM Microbe 2022 Course Workshop Materials for CW06. Mining Microbiomes: Analysis of Complex Microbiome Studies Using only a Laptop and Free Web Tools
Intro to Deep Learning Course Materials
Cheminformatics training covering an intro to drug discovery, molecular file formats and databases, aligning molecules, QSAR, screening and de novo design.
The goal of this repository is to provide a series of course materials that is used for online seminars to introduce modern data science practice using the R language.
Introductory notes on using Geneious (Biomatters) at NIAID
Materials for ACE course on Genetic Linkage Analysis.
This repo contains materials for the Genome Browsers course, taught as part of ACE 2021.
Introduction to Human Next Generation Sequencing Projects and GWAS analysis offered to ACE Mali students. GWAS demo utilizing PLinK, a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.
Training offered to Students of ACE Mali. Intro to NGS and Sanger Sequencing including the technology, sequencers and their applicability to differen research questions.
RML Introduction to Structural Biology
Teaching Materials for 2024-2025 Spatial Transcriptomics workshops, prepared by Margaret Ho (NIAID BCBB Science Support)
Microbiome Data Analysis and Nephele Demo
Training materials for lectures on mechanisms of evolution, sequence similarity, phylogenetics tree building
Materials for the ACE - Uganda course "Molecular Evolution" given in Spring 2020.
An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.
Training materials related to pathways data analysis
Materials for the ACE - Uganda course "Population Genetics & Genomics" given in Spring 2020.
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
Training materials for Prism 8
Python Programming for Biologists
A Gentle Introduction to R, RStudio, and visualization
RNAseq workshop courses and materials
Introductory practical training on preprocessing and QC of RNA Seq data
A general introduction for biologists on scRNAseq, with a focus on the difference from bulk RNA-seq
Training materials for Statistical Testing
Training: Alphafold Protein Structure Prediction with Chimera X. Tutorial on using Chimera X for AlphaFold Protein Structure. It starts by showing how search and navigate the database PDB for relevant structural data.
Training Materials for Survey Data Analysis in R (Exposure from NHANES)
Training materials for UNIX course