These are the slides, data, results etc we will use in the workshop.
Slides
Here are Ceylan Tanes’ presentations on 16S and WGS metagenomics analysis.
Datasets
| Type | Globus Link to FASTQ folder | Mapping file | QC Results | Nephele Results | Biom |
|---|---|---|---|---|---|
| 16S | Copy 16S globus link | 16S_bangladesh_short_40samples.txt | 02f269e1c0da | 5dce63b4e486 | 16s_bangladesh.biom |
| WGS | Copy Globus link to hmp | hmp_mapping_file.txt | b48330f17142 | ee60339cb24b small size: download |
wgsa_hmp_8_sample.biom |
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16S: 40 16S V4 amplicon samples from the Bangladesh 5yr dataset on MicrobiomeDB.
TreatmentGroup Month N infant 10 10 baby 20 10 toddler 30 10 five years 60 10
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WGS: The shotgun metagenomics data are 8 samples from the HMP phase I (WGS) dataset on MicrobiomeDB.
TreatmentGroup body_site body_product N Oral swab Buccal mucosa Mucus 2 Stool Colon Feces 2 Nostril swab Nares Mucus 2 Skin swab Right retroauricular crease Sebum 2
