Diagnostic plots explaining K-means clustering and Fisher's exact test carried out by HDStIM — plot_K_Fisher • HDStIM

Diagnostic plots explaining K-means clustering and Fisher's exact test carried out by HDStIM

Usage

plot_K_Fisher(mapped_data, path = NULL, verbose = FALSE)

Arguments

mapped_data: Returned list from the HDStIM function.
path: Path to the folder to save figures generated by this function NULL by default.
verbose: Logical. To make function more verbose. Default is FALSE.

Value

A list of ggplot objects. If the path is not NULL, PNG files of the plots are saved in the specified folder.

Examples

mapped_data <- HDStIM(chi11$expr_data, chi11$state_markers,
                  chi11$cluster_col, chi11$stim_label,
                  chi11$unstim_label, seed_val = 123, umap = FALSE, umap_cells = NULL,
                  verbose = FALSE)

pk <- plot_K_Fisher(mapped_data, path = NULL, verbose = FALSE)