DM conversion flow
- em_workflows.dm_conversion.flow.convert_if_int16_tiff(file_path: FilePath) None
accepts a tiff Path obj tests if 16 bit if 16 bit convert (write to assets_dir) & return Path else return orig Path
- em_workflows.dm_conversion.flow.convert_2d_mrc_to_tiff(file_path: FilePath) None
Checks Projects dir for mrc inputs. We assume anything in Projects will be 2D. Converts to tiff file, 1024 in size (using constant LARGE_DIM)
env IMOD_OUTPUT_FORMAT=TIF newstack –shrink $shrink_factor$ -antialias 6 -mode 0 -meansd 140,50 f_in.mrc f_out.tif where shrink_factor is input_size/1024 used the smaller of x and y (4092/1024)