Image Portal Workflows

Contents:

  • Project Development
  • Workflows
  • Submitting Jobs
  • API
    • em_workflows
      • Config module
      • File_path module
      • Utils
      • DM Conversion
      • BRT
      • SEM Tomo
      • CZI
  • RML HPC (Big Sky)
  • Managing Prefect Server
  • Managing Prefect Worker
Image Portal Workflows
  • API
  • em_workflows
  • View page source

em_workflows

  • Config module
  • File_path module
  • Utils
    • Neuroglancer module
    • Utils module
  • DM Conversion
    • DM conversion flow
    • DM constants
      • LARGE_2D
      • SMALL_2D
      • TIFS_EXT
      • DMS_EXT
      • JPGS_EXT
      • PNGS_EXT
      • MRCS_EXT
      • VALID_2D_INPUT_EXTS
      • KEYIMG_EXTS
  • BRT
    • BRT flow
    • BRT constants
      • BRT_DEPTH
      • BRT_WIDTH
      • BRT_HEIGHT
  • SEM Tomo
    • sem tomo flow
    • SEM Tomo constants
      • FIBSEM_DEPTH
      • FIBSEM_HEIGHT
      • FIBSEM_WIDTH
  • CZI
    • CZI flow
    • CZI constants
      • VALID_CZI_INPUTS
      • SITK_COMPRESSION_LVL
      • THUMB_X_DIM
      • THUMB_Y_DUM
      • TILE_SIZE
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