Image Portal Workflows

Contents:

  • Project Development
  • Workflows
  • Submitting Jobs
  • API
    • em_workflows
      • Config module
      • File_path module
      • Utils
        • Neuroglancer module
        • Utils module
      • DM Conversion
      • BRT
      • SEM Tomo
      • CZI
  • RML HPC (Big Sky)
  • Managing Prefect Server
  • Managing Prefect Worker
Image Portal Workflows
  • API
  • em_workflows
  • Utils
  • View page source

Utils

  • Neuroglancer module
    • rechunk_zarr()
    • bioformats_gen_zarr_dup()
    • bioformats_gen_zarr()
    • zarr_build_multiscales()
    • zarr_build_multiscales2()
  • Utils module
    • Header
      • Header.x
      • Header.y
      • Header.z
    • BrtOutput
      • BrtOutput.ali_file
      • BrtOutput.rec_file
    • log()
    • lookup_dims()
    • collect_exception_task_hook()
    • update_adoc()
    • copy_tg_to_working_dir()
    • copy_template()
    • notify_api_completion()
    • get_environment()
    • copy_workdirs_and_cleanup_hook()
    • callback_with_cleanup()
    • generate_flow_run_name()
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