Neuroglancer module

em_workflows.utils.neuroglancer.rechunk_zarr(file_path: FilePath) → None
em_workflows.utils.neuroglancer.bioformats_gen_zarr_dup(fp_in: Path, rechunk: bool = False, width: int | None = None, height: int | None = None, resolutions: int | None = None, depth: int | None = None)

Following params alter based on what kind of flow is running…

Parameters:

  • input_fname – Depending on the flow, input fname might be different

  • rechunk – Rechunk zarrs if required

  • width

  • height

  • resolutions

  • depth – These arguments are only used by BRT and SEM flows

em_workflows.utils.neuroglancer.bioformats_gen_zarr(file_path: FilePath, input_fname: str, rechunk: bool = False, width: int | None = None, height: int | None = None, resolutions: int | None = None, depth: int | None = None)

Following params alter based on what kind of flow is running…

Parameters:

  • input_fname – Depending on the flow, input fname might be different

  • rechunk – Rechunk zarrs if required

  • width

  • height

  • resolutions

  • depth – These arguments are only used by BRT and SEM flows

em_workflows.utils.neuroglancer.zarr_build_multiscales(file_path: FilePath) → None
em_workflows.utils.neuroglancer.zarr_build_multiscales2(zarr_fp: Path) → None